Skip to content

update CI; links#1

Merged
lukaskollmer merged 7 commits into
mainfrom
lukas/update-ci
Jun 24, 2026
Merged

update CI; links#1
lukaskollmer merged 7 commits into
mainfrom
lukas/update-ci

Conversation

@lukaskollmer

@lukaskollmer lukaskollmer commented Jun 24, 2026 •
edited by coderabbitai Bot
Loading

Copy link
Copy Markdown
Contributor

update CI; links

♻️ Current situation & Problem

updates the CI to point to SchmiedmayerLab/.github. also updates some links.

⚙️ Release Notes

  • internal changes

📚 Documentation

n/a

✅ Testing

n/a

Code of Conduct & Contributing Guidelines

By creating and submitting this pull request, you agree to follow our Code of Conduct and Contributing Guidelines:

Summary by CodeRabbit

  • Documentation

    • Updated README badges and links to the new GitHub/Swift Package Index endpoints.
    • Replaced the end-of-README “Contributors” section with an “Our Research” section and refreshed footer branding assets.
    • Removed previously stored citation metadata.

  • Chores

    • Updated the CI workflow to use a new reusable workflow reference.
    • Added explicit CI job permissions and configured Linux runners for CI execution.

@lukaskollmer lukaskollmer self-assigned this Jun 24, 2026
@lukaskollmer lukaskollmer added the enhancement New feature or request label Jun 24, 2026
@coderabbitai

coderabbitai Bot commented Jun 24, 2026 •
edited
Loading

Copy link
Copy Markdown

Review Change Stack

Note

Reviews paused

It looks like this branch is under active development. To avoid overwhelming you with review comments due to an influx of new commits, CodeRabbit has automatically paused this review. You can configure this behavior by changing the reviews.auto_review.auto_pause_after_reviewed_commits setting.

Use the following commands to manage reviews:

  • @coderabbitai resume to resume automatic reviews.
  • @coderabbitai review to trigger a single review.

Use the checkboxes below for quick actions:

  • ▶️ Resume reviews
  • 🔍 Trigger review
📝 Walkthrough

Walkthrough

The PR updates CI and README references from StanfordBDHG to SchmiedmayerLab.

Changes

Org migration: StanfordBDHG → SchmiedmayerLab

Layer / File(s) Summary
CI reusable workflow org reference
.github/workflows/ci.yml		 The ci job's uses field switches from StanfordBDHG/.github at v2 to SchmiedmayerLab/.github at v0.2, and job-level permissions are added.
README badges and footer branding
README.md		 Badge URLs, the documentation link, and the footer section are updated to use SchmiedmayerLab references and assets.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 inconclusive)

Check name Status Explanation Resolution
Title check ❓ Inconclusive The title matches the PR's broad themes, but it is too generic to clearly describe the change. Use a more specific title, such as updating the CI workflow and repository links to the new SchmiedmayerLab org.
✅ Passed checks (4 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.

✏️ Tip: You can configure your own custom pre-merge checks in the settings.

✨ Finishing Touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Commit unit tests in branch lukas/update-ci

Comment @coderabbitai help to get the list of available commands.

coderabbitai[bot]
coderabbitai Bot reviewed Jun 24, 2026
View reviewed changes

@coderabbitai coderabbitai Bot left a comment

Copy link
Copy Markdown

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Actionable comments posted: 2

🤖 Prompt for all review comments with AI agents 
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In @.github/workflows/ci.yml:
- Line 29: The CI workflow call is using the mutable reusable workflow
reference, so update the workflow invocation in the ci configuration to pin the
reusable workflow referenced by the uses entry to the exact commit SHA
539ff8f94324720e658a9e578de10ad536f9c5f7 instead of the v0.2 tag. Keep the same
workflow target path and only replace the version reference so the caller is
fully pinned.

In `@README.md`:
- Around line 16-17: The README badge images currently use empty alt text, which
hurts accessibility and triggers MD045. Update the two Markdown image links in
README.md to include descriptive alt text for each Swift Package Index badge,
keeping the existing links intact. Use the badge labels themselves as a guide so
the content remains understandable when read by assistive technologies.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes
ℹ️ Review info
⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro Plus

Run ID: f2e809e0-0921-474d-a4fc-18514c97b1ab

📥 Commits

Reviewing files that changed from the base of the PR and between 44d3c09 and c8142c4.

📒 Files selected for processing (3)
  • .github/workflows/ci.yml
  • CITATION.cff
  • README.md
💤 Files with no reviewable changes (1)
  • CITATION.cff

Comment thread .github/workflows/ci.yml
Comment thread README.md
PSchmiedmayer
PSchmiedmayer approved these changes Jun 24, 2026
View reviewed changes
Comment thread README.md
@lukaskollmer lukaskollmer merged commit 7295e0c into main Jun 24, 2026
7 of 21 checks passed
@coderabbitai coderabbitai Bot mentioned this pull request Jun 25, 2026
Merged
1 task
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Reviewers

@coderabbitai coderabbitai[bot] coderabbitai[bot] left review comments
@PSchmiedmayer PSchmiedmayer PSchmiedmayer approved these changes

Assignees

@lukaskollmer lukaskollmer

Labels

enhancement New feature or request

Projects

None yet

Milestone

No milestone

Development

Successfully merging this pull request may close these issues.

2 participants

@lukaskollmer @PSchmiedmayer